STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1839TIGRFAM: MJ0042 family finger-like protein; SMART: Tetratricopeptide repeat; KEGG: afw:Anae109_4341 zinc finger-domain- containing protein. (986 aa)    
Predicted Functional Partners:
Hoch_6795
TIGRFAM: Myxococcales GC_trans_RRR domain protein; KEGG: ade:Adeh_2592 hypothetical protein.
  
     0.757
Hoch_3816
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: scl:sce0252 hypothetical protein.
 
     0.753
Hoch_1510
KEGG: hypothetical protein.
  
   
 0.750
Hoch_4616
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce8329 FHA domain-containing protein.
 
     0.720
Hoch_4617
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce0296 FHA domain-containing protein.
 
     0.717
Hoch_4573
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: scl:sce2921 TPR repeat-containing protein.
 
     0.703
Hoch_5751
TIGRFAM: YD repeat protein; KEGG: nmu:Nmul_A1373 integrins alpha chain.
  
     0.695
Hoch_1512
TIGRFAM: YD repeat protein; KEGG: bpd:BURPS668_0606 rhs family protein.
  
     0.691
Hoch_2491
SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_4870 TPR repeat-containing protein.
 
    0.688
Hoch_5858
PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: scl:sce6075 hypothetical protein.
  
     0.687
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.