STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1849PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0575 NAD-dependent epimerase/dehydratase family protein. (331 aa)    
Predicted Functional Partners:
Hoch_6075
Nucleotide sugar dehydrogenase; KEGG: scl:sce2793 hypothetical protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol- 3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE domain protein.
 
 0.957
Hoch_5550
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mxa:MXAN_1425 UTP-glucose-1-phosphate uridylyltransferase.
 
  
 0.945
Hoch_2693
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: mei:Msip34_1820 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 
0.923
Hoch_5018
PFAM: NAD-dependent epimerase/dehydratase; dihydrodipicolinate reductase; KEGG: scl:sce6496 hypothetical protein.
 
 0.923
Hoch_3216
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: scl:sce4283 hypothetical protein.
  
 0.911
Hoch_5238
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: scl:sce4259 hypothetical protein.
  
 0.911
Hoch_2692
TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase domain protein; GHMP kinase; KEGG: tau:Tola_2633 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.865
udk
KEGG: mxa:MXAN_4159 uridine kinase; TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase.
     
 0.659
Hoch_1850
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.592
Hoch_2264
PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2168 glycosyl transferase family protein.
 
   
 0.569
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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