STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1853TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: ppw:PputW619_0428 formiminoglutamate deiminase. (487 aa)    
Predicted Functional Partners:
Hoch_1854
TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; KEGG: vei:Veis_3650 N-formylglutamate amidohydrolase.
 
 
 0.991
hutI
Imidazolonepropionase; KEGG: cti:RALTA_A2489 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.
 
 
 0.978
hutH
Histidine ammonia-lyase; KEGG: scl:sce6082 hypothetical protein; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
  
 0.747
Hoch_1852
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rpi:Rpic_0317 carbohydrate kinase, thermoresistant glucokinase family.
       0.697
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.632
Hoch_5770
PFAM: N-formylglutamate amidohydrolase; KEGG: bra:BRADO1349 hypothetical protein.
  
  
  0.587
Hoch_5782
PFAM: N-formylglutamate amidohydrolase; KEGG: tbd:Tbd_1455 N-formylglutamate amidohydrolase.
     
  0.499
Hoch_1851
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: mxa:MXAN_3978 putative acyl-CoA dehydrogenase.
  
    0.490
Hoch_1855
KEGG: scl:sce4420 hypothetical protein.
       0.434
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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