STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1947PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: mxa:MXAN_5598 OmpA domain-containing protein. (490 aa)    
Predicted Functional Partners:
Hoch_6481
PFAM: OmpA/MotB domain protein; KEGG: mxa:MXAN_0855 putative chemotaxis protein MotB.
  
 
 0.691
Hoch_0070
PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: mxa:MXAN_5598 OmpA domain-containing protein.
  
  
 
0.596
Hoch_5152
PFAM: porin LamB type; KEGG: pmy:Pmen_3137 maltoporin.
     
 0.554
Hoch_6198
PFAM: porin LamB type; KEGG: ypb:YPTS_3827 maltoporin.
     
 0.554
Hoch_1948
PFAM: protein of unknown function DUF481; KEGG: sde:Sde_0668 putative salt-induced outer membrane protein.
       0.538
Hoch_5038
PFAM: peptidase M28; PDZ/DHR/GLGF domain protein; WD40 domain protein beta Propeller; protease-associated PA domain protein; peptidase M20; SMART: PDZ/DHR/GLGF domain protein; KEGG: afw:Anae109_2847 WD40 domain-containing protein.
  
 
 0.500
Hoch_2265
KEGG: scl:sce0937 hypothetical protein.
 
 
 0.492
Hoch_3871
PFAM: Vitamin K-dependent gamma-carboxylase; SMART: HTTM domain protein; KEGG: mxa:MXAN_5026 vitamin K-dependent gamma- carboxylase-related protein.
 
    0.492
Hoch_0051
KEGG: gsu:GSU1489 hypothetical protein.
  
     0.488
Hoch_2270
KEGG: mxa:MXAN_4181 hypothetical protein.
 
 
 0.432
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.