STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2129PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ade:Adeh_3083 succinyldiaminopimelate aminotransferase. (413 aa)    
Predicted Functional Partners:
Hoch_2130
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: scl:sce4154 serine protease.
       0.625
Hoch_2640
PFAM: NAD(P)H dehydrogenase (quinone); NADPH- dependent FMN reductase; KEGG: tcx:Tcr_1013 NAD(P)H dehydrogenase (quinone).
   
    0.530
Hoch_1779
PFAM: aminotransferase class I and II; KEGG: scl:sce3029 aminotransferase.
  
     0.528
Hoch_4217
Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: ade:Adeh_3930 malic enzyme.
  
 
 0.469
Hoch_0486
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.464
Hoch_5911
PFAM: Polyprenyl synthetase; KEGG: pca:Pcar_1668 geranyltranstransferase (farnesyldiphosphate synthase); Belongs to the FPP/GGPP synthase family.
 
  
 0.451
Hoch_4014
PFAM: oxidoreductase domain protein; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NmrA family protein; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: tgr:Tgr7_2359 dehydrogenase and related protein-like protein.
 
  
 0.421
Hoch_6714
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: mxa:MXAN_3917 glutamate synthase, large subunit.
  
  
 0.402
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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