STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2202KEGG: ank:AnaeK_3864 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. (514 aa)    
Predicted Functional Partners:
Hoch_3907
PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: ade:Adeh_3807 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
  
  
 
0.929
Hoch_5403
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: acp:A2cp1_3542 peptidase U61 LD- carboxypeptidase A.
 
  
 0.820
Hoch_2139
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: acp:A2cp1_1927 glycosyl transferase family 51.
   
 
 0.562
Hoch_1952
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gsu:GSU3075 penicillin-binding protein.
     
 0.550
Hoch_2203
PFAM: extracellular solute-binding protein family 5; KEGG: noc:Noc_1344 extracellular solute-binding protein.
       0.543
Hoch_0293
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: afw:Anae109_0060 1A family penicillin-binding protein.
     
 0.536
Hoch_4187
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: scl:sce3607 hypothetical protein.
     
 0.535
Hoch_4281
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mxa:MXAN_1173 ErfK/YbiS/YcfS/YnhG family protein.
     
 0.535
Hoch_2201
PFAM: Rubrerythrin; KEGG: scl:sce1753 hypothetical protein.
       0.510
Hoch_1323
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: hypothetical protein.
   
 
 0.503
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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