STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2435PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce3565 hypothetical protein. (522 aa)    
Predicted Functional Partners:
Hoch_2434
PFAM: OmpA/MotB domain protein; KEGG: scl:sce6027 OmpA family outer membrane protein.
   
   0.770
Hoch_3457
PFAM: low-density lipoprotein receptor YWTD repeat; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: LRP5; low density lipoprotein receptor- related protein 5; K03068 low density lipoprotein receptor-related protein 5/6.
  
 
   0.765
Hoch_6539
KEGG: afw:Anae109_2880 hypothetical protein.
  
     0.757
Hoch_4651
PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce5935 thrombospondin-like alanine-rich exported protein.
  
     0.702
Hoch_2927
PFAM: Low density lipoprotein-receptor, class A, cysteine-rich; SMART: Low density lipoprotein-receptor, class A, cysteine-rich; KEGG: hypothetical protein.
  
     0.701
Hoch_0445
PFAM: FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: noc:Noc_2093 integrins alpha chain.
  
 
   0.672
Hoch_1383
PFAM: EGF calcium-binding domain protein; SMART: EGF-like calcium-binding domain protein; type I EGF domain protein; KEGG: hypothetical protein.
  
 
   0.658
Hoch_3070
PFAM: low-density lipoprotein receptor YWTD repeat; SMART: low-density lipoprotein receptor YWTD repeat; KEGG: mxa:MXAN_1735 putative lipoprotein.
  
     0.640
Hoch_1310
KEGG: ank:AnaeK_1325 YD repeat protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; NHL repeat containing protein; SMART: Hedgehog/intein hint domain protein.
  
    0.639
Hoch_1391
PFAM: EGF calcium-binding domain protein; SMART: EGF-like calcium-binding domain protein; type I EGF domain protein; KEGG: hypothetical protein.
  
     0.634
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.