STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2436KEGG: glo:Glov_1651 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Hoch_4871
KEGG: mxa:MXAN_3111 hypothetical protein.
 
     0.582
Hoch_2437
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: mxa:MXAN_5789 riboflavin biosynthesis protein RibF; Belongs to the ribF family.
  
  
 0.561
Hoch_6795
TIGRFAM: Myxococcales GC_trans_RRR domain protein; KEGG: ade:Adeh_2592 hypothetical protein.
  
     0.505
Hoch_5402
PFAM: SNARE associated Golgi protein; KEGG: mxa:MXAN_6458 DedA family protein.
 
     0.444
Hoch_3961
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_1922 TPR repeat-containing protein.
  
     0.432
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.410
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.410
Hoch_0422
PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_2588 dolichyl-phosphate beta-D- mannosyltransferase.
  
     0.408
Hoch_4556
PFAM: Aldehyde Dehydrogenase; aminotransferase class-III; KEGG: bba:Bd0131 succinylglutamic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.407
Hoch_3578
KEGG: scl:sce2903 cytochrome c family protein.
  
    0.406
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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