STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2590Ribulose-phosphate 3-epimerase; KEGG: gme:Gmet_0067 ribulose-5-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (234 aa)    
Predicted Functional Partners:
Hoch_0341
PFAM: Transketolase domain protein; KEGG: bra:BRADO5169 putative transketolase N- terminal section (TK).
 
 0.994
Hoch_5648
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: ank:AnaeK_2837 sugar-phosphate isomerase, RpiB/LacA/LacB family.
 
 0.984
Hoch_3879
TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: pna:Pnap_4499 transketolase; Belongs to the transketolase family.
 0.966
Hoch_3072
PFAM: Carbohydrate kinase, FGGY-like; KEGG: mxa:MXAN_2879 putative xylulokinase.
 
 
 0.950
Hoch_0342
PFAM: Transketolase domain protein; Transketolase central region; KEGG: bja:blr5427 transketolase family protein.
 
 
 0.947
xylB
TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: mmw:Mmwyl1_1088 xylulokinase.
 
 
 0.937
Hoch_4568
PFAM: class II aldolase/adducin family protein; KEGG: mca:MCA0526 hypothetical protein.
    
 0.911
Hoch_2589
PFAM: diacylglycerol kinase catalytic region; KEGG: afw:Anae109_3816 diacylglycerol kinase catalytic region.
   
   0.783
Hoch_2591
PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: azo:azo0743 putative cardiolipin synthetase.
       0.773
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
   0.666
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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