STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2789KEGG: scl:sce0188 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Hoch_2790
Hypothetical protein.
       0.678
Hoch_3436
KEGG: mxa:MXAN_3709 HAD family hydrolase 5'- nucleotidase; TIGRFAM: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; PFAM: HAD superfamily (subfamily IG) hydrolase 5'- Nucleotidase.
  
   0.607
Hoch_1391
PFAM: EGF calcium-binding domain protein; SMART: EGF-like calcium-binding domain protein; type I EGF domain protein; KEGG: hypothetical protein.
  
     0.533
Hoch_1383
PFAM: EGF calcium-binding domain protein; SMART: EGF-like calcium-binding domain protein; type I EGF domain protein; KEGG: hypothetical protein.
  
     0.511
Hoch_0754
PFAM: EGF calcium-binding domain protein; SMART: EGF-like calcium-binding domain protein; type I EGF domain protein; KEGG: hypothetical protein.
  
     0.504
Hoch_3866
PFAM: peptidase C1A papain; KEGG: xft:PD0125 cysteine protease.
  
 
   0.464
Hoch_2311
KEGG: Calcium-binding protein.
  
     0.417
Hoch_1830
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mxa:MXAN_6216 S1 family peptidase.
  
   0.412
Hoch_6097
PFAM: Glutathione S-transferase domain; KEGG: hypothetical protein.
  
 
   0.408
Hoch_1730
TIGRFAM: cysteine-rich repeat protein; Myxococcales GC_trans_RRR domain protein; PFAM: Thrombospondin type 3 repeat; KEGG: scl:sce6661 putative thrombospondin family protein.
  
     0.402
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.