STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2809PFAM: peptidase M20; KEGG: cps:CPS_2920 M20/M25/M40 family peptidase. (319 aa)    
Predicted Functional Partners:
Hoch_2810
PFAM: N-acetyltransferase; KEGG: mxa:MXAN_1194 N-acetyltransferase family protein.
       0.773
Hoch_2811
PFAM: Phytanoyl-CoA dioxygenase; KEGG: kpe:KPK_3004 phytanoyl-CoA dioxygenase, PhyH family.
       0.773
argG
KEGG: hha:Hhal_0725 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.446
Hoch_2808
KEGG: cps:CPS_2924 hypothetical protein.
       0.445
Hoch_0312
PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: azo:azo1891 biotin synthesis protein.
  
     0.436
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.