STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2810PFAM: N-acetyltransferase; KEGG: mxa:MXAN_1194 N-acetyltransferase family protein. (287 aa)    
Predicted Functional Partners:
Hoch_2809
PFAM: peptidase M20; KEGG: cps:CPS_2920 M20/M25/M40 family peptidase.
       0.773
Hoch_2811
PFAM: Phytanoyl-CoA dioxygenase; KEGG: kpe:KPK_3004 phytanoyl-CoA dioxygenase, PhyH family.
       0.773
Hoch_0609
PFAM: protein of unknown function DUF955; SMART: Appr-1-p processing domain protein; KEGG: hypothetical protein.
  
     0.479
Hoch_0202
PFAM: BAAT/Acyl-CoA thioester hydrolase; acyl-CoA thioester hydrolase/bile acid-CoA amino acid N- acetyltransferase; KEGG: rpi:Rpic_2088 bile acid-CoA:amino acid N- acyltransferase.
  
     0.477
Hoch_2808
KEGG: cps:CPS_2924 hypothetical protein.
       0.444
Hoch_6286
PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: bph:Bphy_4597 O-methyltransferase family protein.
  
     0.412
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.