STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2890KEGG: dde:Dde_1866 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Hoch_6447
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.991
Hoch_2848
PFAM: AIG2 family protein; KEGG: mxa:MXAN_1820 hypothetical protein.
 
    0.764
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
 
 0.637
Hoch_5119
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: afw:Anae109_4432 ferredoxin--nitrite reductase.
  
  
 0.594
Hoch_2891
PFAM: AIG2 family protein; KEGG: mxa:MXAN_1819 hypothetical protein.
  
    0.550
Hoch_2892
KEGG: mxa:MXAN_1818 hypothetical protein.
       0.547
Hoch_0666
KEGG: mxa:MXAN_1840 hypothetical protein.
  
     0.546
Hoch_0856
KEGG: mxa:MXAN_1840 hypothetical protein.
  
     0.539
Hoch_3452
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sat:SYN_02272 uroporphyrin-III C- methyltransferase.
  
  
 0.537
Hoch_0659
TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: mxa:MXAN_1848 TP901 family phage tail tape measure protein, core region.
  
     0.529
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.