STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2925TIGRFAM: YD repeat protein; KEGG: scl:sce7826 Rhs family carbohydrate-binding protein. (3456 aa)    
Predicted Functional Partners:
Hoch_2924
KEGG: rso:RSc3184 hypothetical protein.
       0.773
Hoch_2863
PFAM: 5-methylcytosine restriction system component- like protein; KEGG: scl:sce8202 hypothetical protein.
  
     0.589
Hoch_2926
KEGG: mxa:MXAN_6895 hypothetical protein.
       0.529
Hoch_2927
PFAM: Low density lipoprotein-receptor, class A, cysteine-rich; SMART: Low density lipoprotein-receptor, class A, cysteine-rich; KEGG: hypothetical protein.
       0.529
Hoch_3094
SMART: beta and gamma crystallin; KEGG: sde:Sde_3927 Peptidyl-Asp metallopeptidase. Metallo peptidase. MEROPS family M72.
  
     0.517
Hoch_2802
KEGG: ade:Adeh_3861 hypothetical protein.
 
 
 0.503
Hoch_2871
KEGG: ade:Adeh_3861 hypothetical protein.
 
 
 0.503
Hoch_6267
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; LVIVD repeat protein; Redoxin domain protein; KEGG: scl:sce1098 hypothetical protein.
  
     0.494
Hoch_3941
KEGG: scl:sce3005 hypothetical protein.
  
    0.471
Hoch_2801
PFAM: conserved hypothetical protein; KEGG: ade:Adeh_3862 hypothetical protein.
  
     0.463
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.