STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2937PFAM: Annexin repeat; KEGG: ppd:Ppro_0357 hypothetical protein. (922 aa)    
Predicted Functional Partners:
Hoch_3661
TIGRFAM: conserved hypothetical protein; PFAM: conserved hypothetical protein; KEGG: noc:Noc_1873 phage tail region protein.
 
     0.783
Hoch_3607
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
 
     0.782
Hoch_3609
Phage tail protein; KEGG: gsu:GSU0989 NHL repeat-containing protein; TIGRFAM: phage tail protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein.
 
     0.782
Hoch_3608
KEGG: noc:Noc_1865 hypothetical protein.
 
     0.781
Hoch_3664
KEGG: gsu:GSU0982 hypothetical protein.
 
     0.781
Hoch_2009
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gsu:GSU0972 AAA family ATPase.
 
     0.780
Hoch_5257
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: noc:Noc_1879 AAA ATPase.
 
     0.780
Hoch_5978
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gsu:GSU0972 AAA family ATPase.
 
     0.780
Hoch_0655
Phage tail sheath protein FI-like protein; KEGG: mxa:MXAN_1853 heme-binding protein.
 
     0.779
Hoch_0845
Phage tail sheath protein FI-like protein; KEGG: mxa:MXAN_1853 heme-binding protein.
 
     0.779
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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