STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_2978KEGG: scl:sce1895 hypothetical protein. (514 aa)    
Predicted Functional Partners:
Hoch_0869
PFAM: transposase IS4 family protein; KEGG: ank:AnaeK_4105 transposase IS4 family protein.
  
     0.572
Hoch_2977
Hypothetical protein.
       0.553
Hoch_6044
KEGG: scl:sce2311 hypothetical protein.
  
     0.507
Hoch_6267
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; LVIVD repeat protein; Redoxin domain protein; KEGG: scl:sce1098 hypothetical protein.
  
     0.484
Hoch_4848
PFAM: CRISPR-associated protein GSU0053; KEGG: scl:sce0268 hypothetical protein.
  
     0.468
Hoch_2803
PFAM: conserved hypothetical protein; KEGG: scl:sce2124 hypothetical protein.
  
     0.460
Hoch_2872
PFAM: conserved hypothetical protein; KEGG: scl:sce2124 hypothetical protein.
  
     0.460
Hoch_2979
PFAM: fatty acid desaturase; KEGG: scl:sce3491 putative fatty acid desaturase.
       0.440
Hoch_4850
TIGRFAM: CRISPR-associated helicase Cas3, Anaes- subtype; KEGG: scl:sce0266 hypothetical protein.
  
     0.421
Hoch_2322
PFAM: transposase IS4 family protein; KEGG: bac:BamMC406_6556 transposase IS4 family protein.
  
     0.418
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.