Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Hoch_2998 | Hoch_2999 | Hypothetical protein. | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | 0.628 |
Hoch_2998 | Hoch_3000 | Hypothetical protein. | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eca:ECA3292 putative oxidoreductase. | 0.437 |
Hoch_2999 | Hoch_2998 | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | Hypothetical protein. | 0.628 |
Hoch_2999 | Hoch_3000 | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eca:ECA3292 putative oxidoreductase. | 0.530 |
Hoch_2999 | Hoch_3133 | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: scl:sce2479 putative oligosaccharyl transferase. | 0.433 |
Hoch_2999 | Hoch_3278 | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.439 |
Hoch_3000 | Hoch_2998 | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eca:ECA3292 putative oxidoreductase. | Hypothetical protein. | 0.437 |
Hoch_3000 | Hoch_2999 | PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: eca:ECA3292 putative oxidoreductase. | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | 0.530 |
Hoch_3133 | Hoch_2999 | PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: scl:sce2479 putative oligosaccharyl transferase. | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | 0.433 |
Hoch_3278 | Hoch_2999 | Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | PFAM: MCP methyltransferase CheR-type; KEGG: rso:RSc2735 regulatory protein. | 0.439 |