STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3003PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: swp:swp_1032 toxin secretion ATP-binding protein. (918 aa)    
Predicted Functional Partners:
Hoch_2021
PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: scl:sce3882 iron utilization protein.
   
   0.834
Hoch_3004
Hypothetical protein.
       0.773
Hoch_6215
PFAM: outer membrane efflux protein; KEGG: scl:sce2988 outer membrane efflux protein.
  
  
 0.646
Hoch_0326
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_1702 secretion protein HlyD.
  
 
 0.644
Hoch_5840
PFAM: secretion protein HlyD family protein; KEGG: afw:Anae109_0237 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.644
Hoch_6347
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pca:Pcar_0668 Acr family membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.644
Hoch_3005
KEGG: hypothetical protein.
       0.561
Hoch_0186
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: afw:Anae109_4431 ABC transporter related.
 
 
 
0.519
Hoch_3007
PFAM: Radical SAM domain protein; KEGG: swp:swp_1034 arylsulfatase regulator (Fe-S oxidoreductase).
  
    0.506
Hoch_3813
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: gur:Gura_0160 ABC transporter related.
 
 
 
0.500
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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