STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3037Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bgl:bglu_1g10290 hypothetical protein. (140 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
  
 0.588
Hoch_2547
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: dol:Dole_2243 aminotransferase class V.
  
  
 0.588
Hoch_3724
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: afw:Anae109_1098 aminotransferase class V.
  
  
 0.588
Hoch_3280
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: noc:Noc_2486 SUF system FeS assembly protein.
  
  
 0.509
Hoch_3038
Hypothetical protein.
       0.496
Hoch_3036
PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dma:DMR_40020 NAD(P)H:quinone oxidoreductase.
  
  
 0.478
Hoch_3886
KEGG: scl:sce6471 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; Rhodanese domain protein; HesB/YadR/YfhF-family protein; SMART: Rhodanese domain protein; Belongs to the HesB/IscA family.
  
  
 0.456
Hoch_3039
Hypothetical protein.
       0.406
Hoch_3040
KEGG: fph:Fphi_1369 hypothetical protein.
       0.406
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.