STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3043KEGG: hypothetical protein. (336 aa)    
Predicted Functional Partners:
Hoch_3044
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: ftn:FTN_0043 hypothetical protein.
  
 
 0.995
Hoch_3046
PFAM: protein of unknown function DUF876; KEGG: pmy:Pmen_2318 hypothetical protein.
  
  
 0.884
Hoch_3047
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: pay:PAU_03815 hypothetical protein.
  
  
 0.835
Hoch_3051
KEGG: xac:XAC4120 hypothetical protein.
  
  
 0.829
Hoch_3050
PFAM: protein of unknown function DUF879; KEGG: vcj:VCD_000134 protein ImpG/VasA.
  
  
 0.797
Hoch_3039
Hypothetical protein.
  
  
 0.702
Hoch_3053
Hypothetical protein; KEGG: acp:A2cp1_3940 TPR repeat-containing protein.
  
  
 0.606
Hoch_0663
KEGG: mxa:MXAN_1844 hypothetical protein.
  
  
 0.585
Hoch_0853
KEGG: mxa:MXAN_1844 hypothetical protein.
  
  
 0.585
Hoch_1537
KEGG: pca:Pcar_2892 hypothetical protein.
  
  
 0.585
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.