STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3064TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: scl:sce6388 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Hoch_0568
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.701
Hoch_1323
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: hypothetical protein.
    
 
 0.602
Hoch_3065
Hypothetical protein.
       0.491
Hoch_0069
PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: scl:sce7747 putative protein phosphatase.
 
 
   0.477
Hoch_3066
Hypothetical protein; KEGG: scl:sce7895 putative secreted protein.
       0.473
Hoch_5011
KEGG: mxa:MXAN_5413 hypothetical protein.
  
     0.466
Hoch_2328
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gme:Gmet_2298 DNA polymerase III, delta subunit.
 
     0.437
Hoch_4091
KEGG: scl:sce2494 hypothetical protein.
  
     0.424
Hoch_3164
KEGG: scl:sce5360 hypothetical protein.
  
     0.418
Hoch_3063
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mxa:MXAN_5417 S8A family peptidase; Belongs to the peptidase S8 family.
       0.412
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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