STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3072PFAM: Carbohydrate kinase, FGGY-like; KEGG: mxa:MXAN_2879 putative xylulokinase. (556 aa)    
Predicted Functional Partners:
Hoch_2590
Ribulose-phosphate 3-epimerase; KEGG: gme:Gmet_0067 ribulose-5-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.950
Hoch_4568
PFAM: class II aldolase/adducin family protein; KEGG: mca:MCA0526 hypothetical protein.
  
 
 0.939
xylB
TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: mmw:Mmwyl1_1088 xylulokinase.
  
  
 
0.928
Hoch_3073
PFAM: Pyridoxal-dependent decarboxylase; aminotransferase class V; KEGG: mxa:MXAN_2880 putative sphingosine-1- phosphate lyase.
 
 
 0.768
Hoch_2355
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: scl:sce1297 hypothetical protein.
  
 
 0.602
Hoch_4427
PFAM: class II aldolase/adducin family protein; KEGG: sfu:Sfum_2465 class II aldolase/adducin family protein.
 
  
 0.531
Hoch_3071
PFAM: PKD domain containing protein; KEGG: scl:sce9082 hypothetical protein.
  
    0.518
Hoch_4539
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: esa:ESA_01087 DNA-binding transcriptional regulator GalS.
 
 
 
 0.499
Hoch_6122
PFAM: oxidoreductase domain protein; KEGG: lch:Lcho_3206 oxidoreductase domain- containing protein.
 
  
 0.491
Hoch_5801
PFAM: FAD dependent oxidoreductase; KEGG: mxa:MXAN_7329 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.477
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.