STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3192PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: scl:sce6189 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Hoch_6120
KEGG: swd:Swoo_0560 penicillin-insensitive murein endopeptidase.
  
     0.727
hliE
PFAM: beta-lactamase domain protein; KEGG: glo:Glov_3342 beta-lactamase domain protein.
  
    0.576
Hoch_3193
KEGG: hypothetical protein.
       0.531
Hoch_6708
Hypothetical protein; KEGG: scl:sce9357 penicillin-insensitive mureinendopeptidase.
  
     0.520
Hoch_5676
PFAM: metallophosphoesterase; KEGG: scl:sce3807 putative metallo-phosphoesterase.
  
     0.483
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.470
Hoch_3833
PFAM: beta-lactamase domain protein; KEGG: rso:RS04774 hypothetical protein.
 
    0.420
Hoch_3194
KEGG: scl:sce6216 hypothetical protein.
       0.413
Hoch_6627
PFAM: NLP/P60 protein; KEGG: mca:MCA0716 hypothetical protein.
  
     0.410
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.