STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3379Hypothetical protein; KEGG: GI24822 gene product from transcript GI24822- RA. (350 aa)    
Predicted Functional Partners:
Zfp384
KEGG: Zfp384; zinc finger protein 384.
       0.634
Hoch_3381
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bph:Bphy_5198 hypothetical protein.
       0.634
Hoch_3382
FHA domain containing protein; PFAM: Forkhead-associated protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Forkhead- associated protein; KEGG: afw:Anae109_4141 diguanylate cyclase.
       0.629
Hoch_3377
PFAM: ABC-2 type transporter; KEGG: bra:BRADO6504 putative ABC transporter (permease protein).
       0.590
Hoch_3378
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO6503 putative ABC transporter (ATP- binding protein).
       0.590
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.