STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3486PFAM: Thioredoxin domain; KEGG: Thioredoxin family protein; K03671 thioredoxin 1. (159 aa)    
Predicted Functional Partners:
msrB
KEGG: nmu:Nmul_A2110 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.706
Hoch_3487
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; TPR repeat-containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; Tetratricopeptide repeat; KEGG: mxa:MXAN_0933 serine/threonine kinase family protein.
 
     0.572
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.545
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.545
Hoch_1467
PFAM: Redoxin domain protein; KEGG: scl:sce2738 thiol:disulfide interchange protein TlpA.
  
 
 0.542
Hoch_2650
Hypothetical protein; KEGG: scl:sce2858 AhpC/TSA family protein.
  
 
 0.542
Hoch_4595
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: noc:Noc_1054 thioredoxin.
  
 
 0.542
Hoch_5168
KEGG: smt:Smal_0717 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
 
 0.542
Hoch_6263
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: scl:sce7233 thioredoxin family protein.
  
 
 0.542
Hoch_6861
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: nmu:Nmul_A2682 thioredoxin.
  
 
 0.542
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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