STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3514PFAM: AMP-dependent synthetase and ligase; KEGG: ank:AnaeK_0984 AMP-dependent synthetase and ligase. (612 aa)    
Predicted Functional Partners:
Hoch_1698
PFAM: alpha/beta hydrolase fold; KEGG: bgl:bglu_1g08910 hydrolase, alpha/beta fold family protein.
    
  0.800
Hoch_3248
PFAM: AMP-dependent synthetase and ligase; Male sterility domain; phospholipid/glycerol acyltransferase; NAD-dependent epimerase/dehydratase; phosphopantetheine- binding; SMART: phospholipid/glycerol acyltransferase; KEGG: afw:Anae109_1212 AMP-dependent synthetase and ligase.
 
  
0.785
Hoch_1765
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2479 AMP-dependent synthetase and ligase.
  
  
 
0.720
Hoch_1087
PFAM: AMP-dependent synthetase and ligase; KEGG: bgl:bglu_1g16630 AMP-dependent synthetase and ligase.
  
  
 
0.718
Hoch_3198
PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_C0286 putative AMP-dependent synthetase and ligase.
 
 
0.714
Hoch_2364
PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_06164 acyl-CoA synthetases (AMP- forming)/AMP-acid ligases II.
 
 
0.713
Hoch_5505
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_4936 AMP-dependent synthetase and ligase.
  
  
 
0.699
Hoch_3572
PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_2536 putative long-chain-fatty-acid-- CoA ligase.
  
  
 
0.677
Hoch_0475
PFAM: AMP-dependent synthetase and ligase; KEGG: bba:Bd3149 long-chain fatty-acid-CoA ligase.
  
  
 
0.673
Hoch_4679
PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8696 putative long-chain fatty-acid-- CoA ligase.
  
  
 
0.664
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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