STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3543PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce7661 protein kinase. (537 aa)    
Predicted Functional Partners:
Hoch_0426
SMART: serine/threonine protein kinase; KEGG: scl:sce0848 protein kinase.
  
     0.747
Hoch_3763
PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: afw:Anae109_0119 protein kinase.
  
    0.704
mnmA
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.586
Hoch_3541
KEGG: hypothetical protein LOC761802.
  
    0.580
Hoch_3542
KEGG: scl:sce0283 hypothetical protein.
       0.576
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.493
Hoch_3831
KEGG: scl:sce6484 phosphoprotein phosphatase; PFAM: cyclic nucleotide-binding; Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; cyclic nucleotide-binding.
 
   0.419
Hoch_3345
KEGG: mxa:MXAN_4398 protein phosphatase/cyclic nucleotide-binding domain-containing protein; PFAM: cyclic nucleotide-binding; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; cyclic nucleotide-binding.
 
   0.415
Hoch_3540
PFAM: (Uracil-5)-methyltransferase; KEGG: dma:DMR_07760 23S rRNA (uracil-5-)- methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.412
Hoch_5417
KEGG: mxa:MXAN_4398 protein phosphatase/cyclic nucleotide-binding domain-containing protein; PFAM: cyclic nucleotide-binding; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; cyclic nucleotide-binding.
 
   0.406
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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