STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3589PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bte:BTH_I1873 low molecular weight protein- tyrosine-phosphatase. (164 aa)    
Predicted Functional Partners:
Hoch_3588
PFAM: Fructosamine/Ketosamine-3-kinase; aminoglycoside phosphotransferase; KEGG: tgr:Tgr7_2982 fructosamine kinase.
     0.972
Hoch_3447
PFAM: PHP domain protein; KEGG: scl:sce5955 protein-tyrosine-phosphatase.
     
 0.905
kdsB
3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
    
 0.852
Hoch_3587
PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_1677 alpha/beta hydrolase fold.
       0.545
Hoch_3590
KEGG: SNF2 superfamily protein.
       0.518
Hoch_0081
KEGG: mxa:MXAN_1025 capsular exopolysaccharide family protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; ATPase-like, ParA/MinD.
  
 
 0.503
Hoch_3591
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_1286 HAD family hydrolase.
 
    0.483
Hoch_3976
KEGG: scl:sce4758 hypothetical protein.
  
 
 0.435
Hoch_5927
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: afw:Anae109_1372 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.435
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.418
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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