STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3721Hypothetical protein. (164 aa)    
Predicted Functional Partners:
Hoch_1924
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NDUFV2; NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa; K03943 NADH dehydrogenase (ubiquinone) flavoprotein 2.
  
 
 0.766
Hoch_3720
Hypothetical protein.
       0.631
Hoch_3722
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; Tetratricopeptide TPR_2 repeat protein; SMART: cyclic nucleotide-binding; KEGG: mxa:MXAN_3837 cyclic nucleotide-binding domain-containing protein.
       0.615
Hoch_1929
KEGG: gur:Gura_4232 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
  
 0.574
Hoch_4408
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: scl:sce4787 NADH dehydrogenase subunit.
  
  
 0.574
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.466
Hoch_3719
PFAM: Domain of unknown function DUF2520; NAD- dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: dat:HRM2_02520 putative coenzyme F420- dependent NADP oxidoreductase.
       0.466
Hoch_0072
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: afw:Anae109_1891 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.415
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.