STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3787PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mxa:MXAN_1452 radical SAM domain-containing protein. (525 aa)    
Predicted Functional Partners:
Hoch_3095
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: afw:Anae109_3191 sigma-54 dependent trancsriptional regulator.
  
  
 0.611
Hoch_6825
PFAM: 4-vinyl reductase 4VR; KEGG: scl:sce7057 hypothetical protein.
  
  
 0.581
Hoch_3786
PFAM: SNARE associated Golgi protein; phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase.
       0.557
Hoch_2533
PFAM: protein of unknown function DUF344; KEGG: gsu:GSU0728 hypothetical protein.
   
    0.515
Hoch_2162
PFAM: amine oxidase; FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: hypothetical protein.
 
     0.428
Hoch_1889
PFAM: protein of unknown function DUF177; KEGG: gsu:GSU1598 hypothetical protein.
  
     0.413
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.