STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3863PFAM: Extracellular ligand-binding receptor; KEGG: ade:Adeh_4326 ABC branched chain amino acid transporter, periplasmic ligand binding protein. (651 aa)    
Predicted Functional Partners:
Hoch_5396
PFAM: inner-membrane translocator; KEGG: mes:Meso_3323 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.798
Hoch_5395
PFAM: inner-membrane translocator; KEGG: tmz:Tmz1t_0567 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.793
Hoch_5394
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcs:BCAN_A1827 ABC transporter related.
 
  
 0.783
Hoch_5393
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3326 ABC transporter related.
 
  
 0.690
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.671
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.671
Hoch_5391
PFAM: Extracellular ligand-binding receptor; KEGG: mes:Meso_3328 extracellular ligand-binding receptor.
  
     0.442
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.