STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3921PFAM: ABC-3 protein; KEGG: mxa:MXAN_2948 cation ABC transporter, permease protein. (296 aa)    
Predicted Functional Partners:
Hoch_3920
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_2949 cation ABC transporter, ATP- binding protein.
 
 
 0.997
Hoch_3917
PFAM: periplasmic solute binding protein; KEGG: mxa:MXAN_2951 ABC transporter, periplasmic substrate binding protein.
 
  
 0.979
Hoch_3916
KEGG: mxa:MXAN_2952 hypothetical protein.
 
     0.855
Hoch_4676
Transporter; KEGG: sdn:Sden_2396 transporter.
  
  
 0.700
Hoch_2270
KEGG: mxa:MXAN_4181 hypothetical protein.
  
     0.558
Hoch_3919
KEGG: mxa:MXAN_2942 hypothetical protein.
       0.535
Hoch_4767
PFAM: FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat-containing protein.
  
    0.526
Hoch_3814
Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; KEGG: mxa:MXAN_4445 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GGDEF domain containing protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GGDEF domain containing protein; response regulator receiver.
 
   
 0.501
Hoch_1264
PFAM: Protein of unknown function DUF1588; KEGG: mxa:MXAN_4108 putative lipoprotein.
  
     0.499
Hoch_1725
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: mxa:MXAN_7290 hypothetical protein.
  
     0.498
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.