STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3957KEGG: mxa:MXAN_2539 hypothetical protein. (228 aa)    
Predicted Functional Partners:
Hoch_3961
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_1922 TPR repeat-containing protein.
       0.774
Hoch_3958
KEGG: mpt:Mpe_A1220 hypothetical protein.
      
0.773
Hoch_3959
KEGG: scl:sce5946 hypothetical protein.
       0.772
Hoch_3960
KEGG: scl:sce5945 hypothetical protein.
       0.772
Hoch_3962
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_1921 TPR repeat-containing protein.
       0.762
Hoch_3963
KEGG: hypothetical protein.
       0.655
Hoch_3964
TIGRFAM: TonB family protein; KEGG: mxa:MXAN_4867 FHA domain/TonB domain- containing protein.
   
   0.553
Hoch_3965
Hypothetical protein.
       0.515
Hoch_3971
PFAM: outer membrane chaperone Skp (OmpH); KEGG: mxa:MXAN_4727 OmpH family outer membrane protein.
    
 
 0.463
Hoch_3966
Hypothetical protein.
       0.458
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.