STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3972TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: afw:Anae109_1120 surface antigen (D15). (848 aa)    
Predicted Functional Partners:
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.968
Hoch_3730
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: afw:Anae109_2153 pyrrolo-quinoline quinone.
  
 
 0.907
Hoch_3971
PFAM: outer membrane chaperone Skp (OmpH); KEGG: mxa:MXAN_4727 OmpH family outer membrane protein.
 
  
 0.885
Hoch_3974
PFAM: protein of unknown function DUF214; KEGG: scl:sce1635 integral membrane protein.
 
   
 0.859
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
     
 0.820
Hoch_0136
TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_2213 Tol-Pal system TolQ.
  
     0.768
Hoch_1920
PFAM: protein of unknown function DUF214; KEGG: gsu:GSU2270 ABC transporter, permease protein.
 
   
 0.762
Hoch_0135
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mxa:MXAN_5754 transport energizing protein TolR.
  
     0.747
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
   
 0.746
Hoch_6028
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ank:AnaeK_0279 MotA/TolQ/ExbB proton channel.
  
     0.746
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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