STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4088PFAM: protein of unknown function DUF1355; KEGG: acp:A2cp1_2739 protein of unknown function DUF1355. (838 aa)    
Predicted Functional Partners:
Hoch_4089
KEGG: afw:Anae109_2547 hypothetical protein.
 
     0.953
Hoch_3177
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: mxa:MXAN_6612 hypothetical protein.
 
     0.780
Hoch_3173
KEGG: mxa:MXAN_6594 hypothetical protein.
  
    0.773
Hoch_3174
KEGG: mxa:MXAN_6595 TPR domain-containing protein.
  
     0.763
Hoch_4087
Hypothetical protein.
       0.757
Hoch_3176
PFAM: protein of unknown function DUF58; KEGG: ank:AnaeK_4401 protein of unknown function DUF58.
 
     0.711
Hoch_2491
SMART: Tetratricopeptide repeat; KEGG: mxa:MXAN_4870 TPR repeat-containing protein.
  
     0.604
Hoch_5700
PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: scl:sce7718 ATP-dependent helicase.
  
     0.582
Hoch_5591
KEGG: ade:Adeh_2682 hypothetical protein.
  
     0.572
Hoch_4143
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: ade:Adeh_3311 TPR repeat-containing protein.
  
    0.565
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.