STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4089KEGG: afw:Anae109_2547 hypothetical protein. (280 aa)    
Predicted Functional Partners:
Hoch_4088
PFAM: protein of unknown function DUF1355; KEGG: acp:A2cp1_2739 protein of unknown function DUF1355.
 
     0.953
Hoch_3177
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: mxa:MXAN_6612 hypothetical protein.
 
     0.774
Hoch_3173
KEGG: mxa:MXAN_6594 hypothetical protein.
 
     0.765
Hoch_4087
Hypothetical protein.
       0.757
Hoch_3176
PFAM: protein of unknown function DUF58; KEGG: ank:AnaeK_4401 protein of unknown function DUF58.
 
    0.742
Hoch_3174
KEGG: mxa:MXAN_6595 TPR domain-containing protein.
  
     0.741
Hoch_5700
PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: scl:sce7718 ATP-dependent helicase.
  
     0.633
Hoch_3408
KEGG: scl:sce4206 diphosphomevalonate decarboxylase; TIGRFAM: diphosphomevalonate decarboxylase; PFAM: GHMP kinase; GHMP kinase domain protein.
   
 
 0.616
Hoch_4086
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: scl:sce8187 cAMP-dependent protein kinase regulatory subunit.
       0.547
Hoch_4085
PFAM: GCN5-related N-acetyltransferase; KEGG: gur:Gura_2355 GCN5-related N- acetyltransferase.
       0.536
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.