STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4312PFAM: peptidase M56 BlaR1; KEGG: afw:Anae109_4097 peptidase M56 BlaR1. (349 aa)    
Predicted Functional Partners:
Hoch_4311
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: mxa:MXAN_7319 putative transcriptional regulator.
  
  
 0.861
Hoch_4313
PFAM: outer membrane efflux protein; KEGG: dar:Daro_2628 outer membrane efflux protein.
       0.664
Hoch_4314
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: geo:Geob_0857 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.664
Hoch_4315
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: scl:sce8711 RND divalent metal cation efflux transporter CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.630
Hoch_4310
Hypothetical protein; KEGG: scl:sce3387 glucosyltransferase-I precursor.
       0.532
Hoch_4391
PFAM: Penicillinase repressor; KEGG: afw:Anae109_4098 CopY family transcriptional regulator.
  
  
 0.413
Hoch_4716
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: mxa:MXAN_4242 putative transcriptional regulator.
  
  
 0.413
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.