STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4318Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ade:Adeh_2483 AraC family transcriptional regulator. (267 aa)    
Predicted Functional Partners:
Hoch_4319
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dma:DMR_02230 hypothetical protein.
  
    0.775
Hoch_1532
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: pla:Plav_1108 helix-turn-helix domain- containing protein.
  
     0.521
Hoch_4317
Hypothetical protein.
       0.484
Hoch_3802
PFAM: beta-lactamase; KEGG: dma:DMR_15930 putative beta-lactamase precursor.
  
     0.441
Hoch_4715
PFAM: peptidase M56 BlaR1; KEGG: xca:xccb100_0050 membrane anchored putative peptidase.
  
     0.424
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.