STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4410PFAM: Protein of unknown function DUF2309; KEGG: scl:sce8745 hypothetical protein; Belongs to the UPF0753 family. (996 aa)    
Predicted Functional Partners:
Hoch_4411
PFAM: sulphate transporter; KEGG: scl:sce8746 SulP family sulfate transporter.
     0.948
Hoch_4409
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: scl:sce8744 NADH dehydrogenase subunit.
  
 0.947
Hoch_4407
PFAM: carbonic anhydrase; KEGG: bbt:BBta_6172 putative carbonic anhydrase.
  
    0.901
Hoch_4408
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: scl:sce4787 NADH dehydrogenase subunit.
 
     0.840
Hoch_2218
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: scl:sce7130 ECF family RNA polymerase sigma factor.
  
     0.608
Hoch_2171
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.582
Hoch_6725
PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: scl:sce5357 hypothetical protein.
  
     0.483
Hoch_5220
KEGG: scl:sce4394 hypothetical protein.
  
     0.481
Hoch_1928
KEGG: glo:Glov_3127 proton-translocating NADH- quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.
 
  
 0.465
Hoch_3531
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: scl:sce1936 putative NADH dehydrogenase.
  
  
 0.465
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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