STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBTIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: mmw:Mmwyl1_1088 xylulokinase. (508 aa)    
Predicted Functional Partners:
Hoch_4568
PFAM: class II aldolase/adducin family protein; KEGG: mca:MCA0526 hypothetical protein.
  
 
 0.939
Hoch_2590
Ribulose-phosphate 3-epimerase; KEGG: gme:Gmet_0067 ribulose-5-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.937
Hoch_3072
PFAM: Carbohydrate kinase, FGGY-like; KEGG: mxa:MXAN_2879 putative xylulokinase.
  
  
 
0.928
Hoch_4543
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: avn:Avin_27360 mannitol dehydrogenase.
 
   
 0.798
Hoch_6620
KEGG: ent:Ent638_0155 D-xylose transporter subunit XylF.
 
   
 0.634
Hoch_4539
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: esa:ESA_01087 DNA-binding transcriptional regulator GalS.
 
 
 
 0.626
Hoch_6622
PFAM: inner-membrane translocator; KEGG: dda:Dd703_0081 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.619
Hoch_2355
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: scl:sce1297 hypothetical protein.
  
 
 0.602
Hoch_4325
PFAM: extracellular solute-binding protein family 1; KEGG: avn:Avin_27400 periplasmic mannitol-binding protein of mannitol ABC transporter.
 
     0.565
Hoch_1486
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rpf:Rpic12D_0944 transcriptional regulator, LacI family.
 
 
 
 0.545
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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