STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4554PFAM: aminotransferase class-III; KEGG: kpn:KPN_00577 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (428 aa)    
Predicted Functional Partners:
Hoch_0564
Acetylornithine transaminase; PFAM: aminotransferase class-III; KEGG: sat:SYN_01215 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.923
Hoch_6743
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: bpy:Bphyt_3917 methylmalonate-semialdehyde dehydrogenase.
 
 0.921
Hoch_3413
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: scl:sce6400 hypothetical protein.
 
  
 0.915
panC
Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.913
Hoch_1758
Gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: hypothetical protein; K00681 gamma- glutamyltranspeptidase.
    
  0.901
Hoch_3500
PFAM: gamma-glutamyltranspeptidase; KEGG: ank:AnaeK_4067 gamma-glutamyltransferase.
    
  0.901
Hoch_4488
PFAM: gamma-glutamyltranspeptidase; KEGG: scl:sce8286 gamma-glutamyltransferase.
    
  0.901
Hoch_4900
KEGG: spl:Spea_1864 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
    
  0.901
Hoch_6136
KEGG: shn:Shewana3_3514 gamma-glutamyltransferase 2; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
    
  0.901
Hoch_6202
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pla:Plav_0838 taurine dioxygenase.
     
  0.900
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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