STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4555PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase; KEGG: hypothetical protein; K10852 isopenicillin-N N-acyltransferase. (362 aa)    
Predicted Functional Partners:
Hoch_4556
PFAM: Aldehyde Dehydrogenase; aminotransferase class-III; KEGG: bba:Bd0131 succinylglutamic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.924
Hoch_1767
PFAM: peptidase S45 penicillin amidase; KEGG: ade:Adeh_3892 penicillin amidase.
     
  0.900
Hoch_4554
PFAM: aminotransferase class-III; KEGG: kpn:KPN_00577 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.800
Hoch_4553
KEGG: rme:Rmet_1153 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
       0.768
Hoch_2423
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sfr:Sfri_0891 SecC motif-containing protein.
  
     0.762
Hoch_5693
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: gur:Gura_3712 hypothetical protein.
  
     0.728
Hoch_5751
TIGRFAM: YD repeat protein; KEGG: nmu:Nmul_A1373 integrins alpha chain.
 
     0.727
Hoch_1512
TIGRFAM: YD repeat protein; KEGG: bpd:BURPS668_0606 rhs family protein.
 
     0.725
Hoch_6818
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: trypsin epsilon.
  
     0.722
Hoch_6795
TIGRFAM: Myxococcales GC_trans_RRR domain protein; KEGG: ade:Adeh_2592 hypothetical protein.
  
     0.719
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.