STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4684PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tgr:Tgr7_0156 DEAD/DEAH box helicase domain- containing protein. (1523 aa)    
Predicted Functional Partners:
Hoch_4683
PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: tgr:Tgr7_3176 DNA-(apurinic or apyrimidinic site) lyase / endonuclease VIII; Belongs to the FPG family.
  
 0.938
Hoch_6628
PFAM: DNA primase small subunit; KEGG: afw:Anae109_2830 DNA primase small subunit.
  
     0.657
Hoch_6355
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: afw:Anae109_4038 ATP-dependent DNA ligase.
 
    0.636
Hoch_4933
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA ligase domain protein; KEGG: ade:Adeh_4160 ATP-dependent DNA ligase.
 
    0.556
Hoch_4685
KEGG: lpp:lpp0329 hypothetical protein.
       0.545
Hoch_4686
Hypothetical protein.
       0.545
Hoch_3330
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; KEGG: afw:Anae109_0939 DNA ligase D.
 
    0.426
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.