STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4717PFAM: 3D domain protein; KEGG: scl:sce0854 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Hoch_0233
KEGG: sde:Sde_1041 hypothetical protein.
   
  
 0.645
Hoch_0501
PFAM: Peptidoglycan-binding lysin domain; KEGG: ade:Adeh_2701 peptidoglycan-binding LysM.
   
  
 0.645
Hoch_3663
KEGG: gsu:GSU0981 hypothetical protein.
   
  
 0.645
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.608
Hoch_0661
KEGG: mxa:MXAN_1846 hypothetical protein.
   
  
 0.579
Hoch_0733
KEGG: hypothetical protein.
   
  
 0.579
Hoch_0851
KEGG: mxa:MXAN_1846 hypothetical protein.
   
  
 0.579
Hoch_4719
PFAM: protein of unknown function DUF167; KEGG: ade:Adeh_1087 hypothetical protein; Belongs to the UPF0235 family.
       0.554
Hoch_4720
KEGG: scl:sce3660 hypothetical protein.
       0.554
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.