STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4782PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: hypothetical protein. (163 aa)    
Predicted Functional Partners:
Hoch_4781
PFAM: protein of unknown function DUF1428; KEGG: cko:CKO_02698 hypothetical protein.
     0.859
Hoch_6102
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: vap:Vapar_4029 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.714
Hoch_1934
PFAM: 3-demethylubiquinone-9 3-methyltransferase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_B2536 hypothetical protein.
 
  
 0.695
Hoch_4348
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: scl:sce5142 hypothetical protein.
 
     0.677
Hoch_4755
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: vap:Vapar_4029 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.635
Hoch_4783
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hypothetical protein.
       0.603
Hoch_4455
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: bba:Bd2205 cell division inhibitor SulA.
  
    0.569
Hoch_4903
PFAM: domain of unknown function DUF1731; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: afw:Anae109_3700 hypothetical protein.
  
    0.552
Hoch_1444
PFAM: bifunctional deaminase-reductase domain protein; KEGG: ank:AnaeK_1068 bifunctional deaminase- reductase domain protein.
 
    0.533
Hoch_4780
PFAM: helix-turn-helix HxlR type; KEGG: oan:Oant_2549 HxlR family transcriptional regulator.
       0.523
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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