STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4788PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 3 domain protein; KEGG: sde:Sde_0475 beta-glucosidase-related glycosidases-like. (1564 aa)    
Predicted Functional Partners:
Hoch_6229
PFAM: Carbohydrate binding family 6; glycoside hydrolase family 5; SMART: cellulose binding type IV; KEGG: sde:Sde_2929 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.973
Hoch_4284
PFAM: Carbohydrate binding family 6; glycoside hydrolase family 5; SMART: cellulose binding type IV; KEGG: rfr:Rfer_1104 glycoside hydrolase family protein.
  
 0.971
Hoch_2072
PFAM: glycoside hydrolase family 3 domain protein; KEGG: hch:HCH_06825 beta-glucosidase-like protein.
  
  
 
0.929
Hoch_1250
PFAM: glycoside hydrolase family 3 domain protein; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.927
Hoch_1481
Beta-galactosidase; KEGG: hch:HCH_06907 beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
    
 0.911
Hoch_6082
PFAM: glycoside hydrolase family 1; KEGG: scl:sce4196 beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.911
Hoch_2620
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cja:CJA_0732 oligo-1,6-glucosidase, putative, glu13A.
   
 
 0.905
Hoch_4545
PFAM: glycoside hydrolase family 16; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cja:CJA_2759 beta glucanase, putative, glu16F.
  
 0.674
Hoch_3100
PFAM: glycoside hydrolase family 16; KEGG: cja:CJA_2759 beta glucanase, putative, glu16F.
  
 0.669
Hoch_1472
Chitinase; KEGG: sde:Sde_3605 glycosyl hydrolase family chitinase; PFAM: glycoside hydrolase family 18; Carbohydrate- binding family V/XII; PKD domain containing protein; SMART: chitinase II; PKD domain containing protein; Carbohydrate-binding family V/XII; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.656
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.