STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4838PFAM: Protein of unknown function DUF2183; KEGG: afw:Anae109_3505 hypothetical protein. (440 aa)    
Predicted Functional Partners:
Hoch_5208
KEGG: eba:ebA6922 type I topoisomerase.
  
     0.540
Hoch_4839
PFAM: arginine N-succinyltransferase beta subunit; KEGG: scl:sce1638 arginine N-succinyltransferase.
       0.485
Hoch_4840
Hypothetical protein; KEGG: bgl:bglu_1g14350 DNA polymerase III, subunits gamma and tau.
       0.485
Hoch_4841
KEGG: bxe:Bxe_B1181 hypothetical protein.
       0.485
Hoch_4842
Hypothetical protein; KEGG: afw:Anae109_3917 TPR repeat-containing protein.
       0.485
Hoch_6194
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: scl:sce3509 general stress protein.
  
     0.475
Hoch_3834
PFAM: protein of unknown function DUF1206; KEGG: afw:Anae109_1905 hypothetical protein.
  
     0.460
Hoch_4843
Hypothetical protein.
       0.429
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.