STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4870PFAM: SCP-like extracellular; KEGG: gur:Gura_2270 allergen V5/TPX-1 family protein. (293 aa)    
Predicted Functional Partners:
Hoch_2424
PFAM: SCP-like extracellular; KEGG: mxa:MXAN_5965 hypothetical protein.
  
     0.707
Hoch_0369
PFAM: SCP-like extracellular; KEGG: ade:Adeh_1604 allergen V5/TPX-1 related.
  
     0.701
Hoch_4871
KEGG: mxa:MXAN_3111 hypothetical protein.
   
 0.569
Hoch_4872
Hypothetical protein; KEGG: ank:AnaeK_0467 exonuclease SbcC.
       0.518
Hoch_0404
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_3698 ABC transporter related.
  
  
 0.513
Hoch_5395
PFAM: inner-membrane translocator; KEGG: tmz:Tmz1t_0567 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.459
Hoch_6705
Chromosome segregation ATPase-like protein; KEGG: afw:Anae109_0769 heat shock protein DnaJ domain-containing protein.
  
    0.425
Hoch_4873
PFAM: type IV pilus assembly PilZ.
       0.413
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.