STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4882PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_0799 putative acyl-CoA synthetase. (543 aa)    
Predicted Functional Partners:
Hoch_2957
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; condensation domain protein; KR domain protein; Acyl transferase; phosphopantetheine-binding; KEGG: eca:ECA0602 type I polyketide synthase.
 
0.868
Hoch_1750
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; aminotransferase class-III; Acyl transferase; Luciferase-like, subgroup; phosphopantetheine- binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
 
0.855
hlaA
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; condensation domain protein; KR domain protein; Acyl transferase; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: mxa:MXAN_4526 polyketide synthase type I.
  
0.796
Hoch_1312
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; aminotransferase class-III; Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; phosphopantetheine-binding; KEGG: pfo:Pfl01_1845 peptide synthase.
  
 
0.721
Hoch_1087
PFAM: AMP-dependent synthetase and ligase; KEGG: bgl:bglu_1g16630 AMP-dependent synthetase and ligase.
 
  
 0.718
Hoch_4197
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: ppf:Pput_3258 acyl-CoA dehydrogenase domain- containing protein.
 
 
  0.714
Hoch_2702
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like.
 
 
  0.706
Hoch_1367
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
0.682
hlaB
PFAM: KR domain protein; Acyl transferase; short- chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; alpha/beta hydrolase fold; Alcohol dehydrogenase zinc-binding domain protein; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.
 
 0.679
Hoch_6526
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2807 acyl-CoA synthetase (AMP- forming)/AMP-acid ligase II.
  
     0.662
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.