STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5067TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: afw:Anae109_1161 putative membrane-associated zinc metalloprotease. (367 aa)    
Predicted Functional Partners:
Hoch_0486
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.721
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
  
  
 0.660
Hoch_2516
KEGG: mxa:MXAN_5808 carboxyl-terminal protease family protein; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
 
  
 0.627
Hoch_3695
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: gsu:GSU2268 outer membrane protein, putative.
  
  
 0.624
Hoch_3972
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: afw:Anae109_1120 surface antigen (D15).
  
  
 0.624
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
   
 0.587
Hoch_0485
PFAM: phosphatidate cytidylyltransferase; KEGG: scl:sce6194 phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
    0.577
Hoch_5068
Hypothetical protein; KEGG: gur:Gura_3834 glycosyl transferase family protein.
       0.561
Hoch_5069
PFAM: glycosyl transferase group 1; KEGG: scl:sce1750 putative glycosyltransferase.
 
    0.556
Hoch_6714
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: mxa:MXAN_3917 glutamate synthase, large subunit.
  
  
 0.491
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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